Whenever people ask me these "deep questions" after I tell them I'm a physicist, I tell them that. Science is all about the reality you can measure, not about meaning and what lies "deeper".
this is also like saying the universe in the time of newton consisted of only newtons laws, which is untrue. if the universe is science, then you have to say the universe is changing as science changes. unless the universe really is just made of published journal papers.
What I really wonder about is how, if ever, we will refine our abilities to observe the finer grains - and to what extent that's possible. I remember physicists discussing the observations possible given particle accelerator size from lectures in undergrad. The future was not very bright.
I think im a fan of what is described as quantum bayesianism in the article, that quantum mechanics is basically a probabiltiy theory, and this probability theory is required to express our expectations from measurements (quantum mechanics encodes our beliefs about what will be observed given some knowledge about a system) and this is fundamentally a "retreat" because we dont know how to describe the underlying reality. even though calculating the probabilitoes may be very precise.
but i am havig trouble distinguising quantum bayesianism from the standard "model vs reality" fare as the motovation seems very similar