Even the New Horizons team needed a lot of effort to catch their new target passing in front of a star [1]. Granted, Planet Nine is a bigger target, but the odds are still pretty low.
[1] "NASA’s New Horizons Team Strikes Gold in Argentina" https://www.nasa.gov/feature/nasa-s-new-horizons-team-strike...
This page calculates that Pluto for instance spans only 3 pixels at the Hubble space telescopes resolution: http://www.planetary.org/blogs/emily-lakdawalla/2013/0214101...
In the 1840s, Urbain Le Verrier used Newtonian mechanics to predict the position of the then-undiscovered planet Neptune after analyzing perturbations in the orbit of Uranus. Subsequent observations of Neptune in the late 19th century led astronomers to speculate that Uranus's orbit was being disturbed by another planet besides Neptune.[1]
However it turned out that Pluto was not Planet X after all. After all Neptune and Uranus are respectively about 7900 and 6700 times more massive than Pluto.
In 1978, the discovery of Pluto's moon Charon allowed the measurement of Pluto's mass for the first time: roughly 0.2% that of Earth, and far too small to account for the discrepancies in the orbit of Uranus. Subsequent searches for an alternative Planet X, notably by Robert Sutton Harrington, failed. In 1992, Myles Standish used data from Voyager 2's flyby of Neptune in 1989, which had revised the estimates of Neptune's mass downward by 0.5%—an amount comparable to the mass of Mars—to recalculate its gravitational effect on Uranus. With the new figures added in, the discrepancies, and with them the need for a Planet X, vanished. Today, the majority of scientists agree that Planet X, as Lowell defined it, does not exist. Lowell had made a prediction of Planet X's orbit and position in 1915 that was fairly close to Pluto's actual orbit and its position at that time; Ernest W. Brown concluded soon after Pluto's discovery that this was a coincidence, a view still held today.[2]
[1] https://en.wikipedia.org/wiki/Pluto#Discovery [2] https://en.wikipedia.org/wiki/Pluto#Planet_X_disproved
The planet and the star can both be much smaller than a pixel, as long as the planet is big enough to cover the star.
But! They do happen and are a great way to learn more about those objects as very briefly you can see something of them. The problem is that first you need to know the exact orbit, then you can predict occulations.
See https://en.m.wikipedia.org/wiki/(486958)_2014_MU69 for an example. It recently had some occulations that have helped better understand it.
The fact is, we simply do not image enough of the sky on a regular basis to have all this imagery just lying around. We do have some pretty good all sky surveys, but they don't use telescopes big enough to see something like planet nine. That's why it takes a dedicated effort to discover planet nine. It'll take imaging huge sections of the sky multiple times with enough delay between them to be able to see separation in the position of the object. Such large telescopes are very expensive and rare so their time is very valuable and in high demand.
Distant stellar transits will happen but we're not monitoring the entire sky 24/7 to the degree needed to spot all of them. If we were we'd be able to see the planet directly just as easily.
Our view of the sky is typically just a matter of seeing through little soda straws from one day to the next, so we miss a lot.
[1] https://www.theguardian.com/science/2016/oct/19/planet-nine-...