So what? You understood, and to all appearances agreed with, the point being made ("thinking of Japanese as analogous to English is counter-productive for most students"), right?
The poster clearly wasn't making any broader claim about the "qualitative similarity of all human languages" (whatever that might be).
I tried to avoid the "apple to oranges" objection you are raising by restricting the domain to that of "potential languages", which seems like the "fair" point of reference to take. Since Japanese and English are both natural human languages, I would consider comparing them more akin to comparing red apples and green apples.
The main point I was trying to make (which admittadly got berried at the end of my post) was that "wrong" and "not useful" are two very different concepts.
[0] This is best observed in deaf children who are not exposed to sign language at a young age.