I work from home and I have a lot of flexibility since I live in a different timezone from my clients so I make that work but it is frustrating for my wife. Workouts don't really seem to help much, melatonin seems to improve things slightly.
Sometimes my clock gets so out of phase that I'll fall a sleep at around 10AM and sleep until 19PM or so. It's pretty tough to go back to regular schedule after that, heh.
We know that blue light is a strong cue to your brain to keep delaying the clock -- perhaps your brain is unusually sensitive to it.
I do tend to work late at night because of timezone differences between me and my clients.
https://www.amazon.com/gp/product/B000USRG90
My experience with flux was that the screen still gave off enough blue light that it didn't make much of a difference for me.
Seems increasingly common with our modern lifestyle.
http://my.clevelandclinic.org/health/articles/delayed-sleep-...
Low functioning on little sleep, but a good night or two and I'm up at 1am.
Right now, I simply sleep when I'm tired and waking when I please most days. I generally sleep from about 4am to noon, approximately. Additionally, sleeping later in the day produces a better sleep. I sporadically sleep through alarms and loud noises.
It does make the normal 8-5 world more difficult to deal with.
So perhaps your natural rhythm is very late night bedtime and late morning wake time? Does make life in the standard 8-5 world difficult unfortunately.
EDIT: non-affiliate link to his book The Power of When https://www.amazon.com/Power-When-Discover-Chronotype-Lunch/...