Not saying that Dropbox doesn't face business risks -- but I think the open-source alternatives will not be the biggest risk ulttimately in the mainstream market.
I do think they will face margin pressures as long as Google/MSFT/Apple/Amazon believe this to be too important of a market to cede to Dropbox.
Why does anyone use hosted travis CI despite being able to run it ourselves? Why do people use google apps instead of hosting their own mail servers? Because instead of having your employees do something they're not necessarily good at, you will pay experts to do something they are (supposedly) good at for a fraction of the price.
It's just like Linux. It can own the backend / developer world, but Linux is still no where on the desktop for the average consumer.
There is absolutely no mention whatsoever neither in the article, nor in your analysis above about Owncloud.
Owncloud (or any OSS fork thereof) is an existential threat to Dropbox's core offering: while the consumer side is not yet price-competative, it can already be one-click deployed by many VPS providers. And the business case for hosting mission-critical data onsite, or at least own leased equipment & encryption is strong, and enjoys economies of scale.