Either way, the trans population is very much overrepresented in the survey. You took one of the sources from the link which claims 0.3%. The next source which I would trust (DSM-5 stats) claims 0.005-0.014% natal male and 0.002-0.003% natal female for gender dysphoria.
It could be that this is just as wrong as the "only hostility is the problem". Not everybody sees the same barriers. Not everyone faces the same challenges. We don't even know if/what's more interesting, because we're bombarded with ideas of what should be more interesting since very young age. Software engineers I know successfully raise girl geeks for example.
What I find hard to believe is that some people don't think that women get treated differently than men, or that that wouldn't matter when it comes to people choosing to participate in certain communities.
In fact trans people appear to be over-represented in this survey as 1.7% of people in it were trans compared to optimistic 0.3% of the US being transgender [0]
[0] https://www.quora.com/What-percentage-of-the-US-population-i...