Maybe some day email will fade away giving its place to an IM, though I'm not sure it will always be spam-filter free.
Based on a quick search, you are right that the phrase "permission based email" has been SEO'ed into uselessness by email marketing services. What should it be called? Screening? But the spam filtering services have almost SEO'ed that into uselessness.
Having just read a former google abuse team member's take on end to end encryption and anti-spam[1], this topic now looks a lot more complex. Regarding IM's, he mentions how spam-free WhatsApp is and argues that spam is a lot easier to fight when you have central control because you can change anything at any time at any point (client or server).
[1] Mike Hearn, https://moderncrypto.org/mail-archive/messaging/2014/000780....