First you read h1, find the right header. Then h2 with 2 levels of detail, which hits h2 and h3. You miss the sub-section you wanted because it was marked h4 instead of h3.
It's a broken tree structure... that'll cause problems any time somebody wants to do a logical traversal.
[1]: http://www.w3.org/TR/WCAG20-TECHS/H42.html [2]: http://www.w3.org/TR/WCAG20-TECHS/H30.html
As others have mentioned, it's likely flagged as an accessibility issue since having an h4 follow an h2 indicates a broken document structure.
It's also probably included in the tool because things like that usually (though not always) mean that the developer is just using the h4 tag based on how it looks as opposed to actual semantic meaning, and the tool is designed to get you to put more thought into what you're actually building.