This is only an indication that arbitrary subsets of R^3 are not a good way to model three dimensional space.
But now the author insists that "oh no, you get the same paradox with finite pieces". And yet on every probe of that point, it comes back to an issue of infinities. So what's wrong with the traditional explanation? And how does this article justify a "finite version" of the partition.
For example, there is a curve that cuts the plane into just two pieces, but the line itself has infinitely small resolution [1] and hence you can't cut it. In fact, there is no segment of this line, no matter how small, that you can cut in a finite amount of time!
Does that help?
[0] Actually that only shows that at least one of the pieces must have uncountably many points, but in the theorem we find that at least four pieces must have uncountably many points.
Is it an issue of continuity that's not related to the pieces being arbitrarily small? I still don't see where this refutes the traditional line about the theorem being an artifact of uncountable sets.