I think there's fewer no-doubt classics among fully 3D games (Doom is 3D graphics build with 2D sprites, so I am actually walking back my amazement on that -- it's a tweener, not like Quake which was rendered polygons), but that's just because they've had less time to establish themselves as classics. Final Fantasy VII, Bioshock, Resident Evil 4... I think all of those are going to be talked about as long after their release as those games you mentioned.