You're also assuming that the advice acted upon by the POTUS was based on the Chicago school.
For the former point, it leaves out FNM/FRE, housing speculation, easy credit by the fed, a weak dollar, increasing debt from foreign wars, the piss-poor rating agencies, the asset bubble driven by chinese liquidity, etc.
For the latter point, there were economic decisions made that do not align with that school of thought.
tl;dr -- Post hoc ergo propter hoc.
The author of the article discusses not just Chicago School monetarism, but also the many other strains of economic thought over the past decades, including the 'New Keynesians.' Krugman apparently also disagrees with the New Keynesians, and the rest of the economic mainstream of the past 30 years, not just the Chicago School.
What the author is getting at is that Krugman doesn't seem to be reading economics anymore, from any school of thought.
Looking at the author's CV (http://faculty.chicagobooth.edu/john.cochrane/research/Paper... [DOC]), he appears to be a libertarian. Libertarians weren't exactly well-represented in the Bush administration, and CATO were among its fiercest critics on financial and foreign policy issues.
The anger over Krugman's piece doesn't seem to be limited to Cochrane or Chicago School economists either. Cochrane's personal web page also links to a similar piece featured on Huffington Post rebutting Krugman: http://www.huffingtonpost.com/david-k-levine/an-open-letter-...
1. Correlation is causation? 2. It is all the Bush adminstration's fault.
Accusing people of "deliberate obtuseness" is no way to have an argument.
Krugman is not offering up a hypothesis that is better at explaining observations than his opponents. He is making an argument based on an ideological position while ignoring evidence suggesting, at a minimum, that his hypothesis is not supported. This is not science.
As Cochrane notes in one of his "minute points", *Pretty much all we have been doing for 30 years is introducing flaws, frictions, and new behaviors, especially new models of attitudes to risk, and comparing the resulting models, qualitatively to data." This set of "we" includes the behaviorists and "complexity economists" (i.e. people who really enjoy massive simulations of simple agents).
1. The chicago school economists were incredibly influential in the bush government to the exclusion of all other economists.
2. It all ended in disaster.
I think Krugman is correct in pointing out that there is something very wrong with the advice these guys were providing.