Java and Scala are both pretty usable with Maven or SBT (my own Java projects use SBT now). Clojure is pretty much limited to Leiningen. (And, personally, I find working with Leiningen to be a huge drag.)
Personally I find leiningen a breath of fresh air after working with Maven (and Ivy, then ant before it). But you can certainly use Maven with Clojure if you'd prefer.
For IDEs, in Clojure, you have the choice of Vim, Emacs, Cursive (for IntelliJ), Light Table, and Counterclockwise (for Eclipse), and more. All of them are good, pick your favorite.