Finding bad news when you're a security auditor is good.
Someone hired to do an investigation like this has an incentive to downplay any results. If they agreed with the accusations, GitHub would either have to hide the results, or publicly say "Yeah, we think we were likely legally liable for a hostile and sexually abusive work environment". They would not be taking those auditors out for celebratory drinks.
If the consultant says "Yep, you're in the clear", GitHub can announce publicly how great everything is.
Finding bad news when you're investigating a PR disaster is bad.
(For the record, I never saw any unethical fairness opinions while I was in investment banking)
The consulting industry has similar dynamics. They are mainly there to provide evidence in favor of a plan proposed by whomever is their primary contact. See, for example, the article by the BCG consultant at [2]: "What I could not get my head around was having to force-fit analysis to a conclusion. In one case, the question I was tasked with solving had a clear and unambiguous answer: By my estimate, the client’s plan of action had a net present discounted value of negative one billion dollars. Even after accounting for some degree of error in my reckoning, I could still be sure that theirs was a losing proposition. But the client did not want analysis that contradicted their own, and my manager told me plainly that it was not our place to question what the client wanted."
1: http://www.mergersandinquisitions.com/investment-banking-fai...
It's a well-known problem with auditor/audited relationships. What the customer wants is a clean bill of health after an easy audit. The auditor needs to be tough enough to maintain a good reputation, but beyond that they are looking to maximize volume. The Economist mentions this every year or two [1], and they're especially concerned when auditing firms do a lot of financial consulting for the audited firms. Then there's an even stronger incentive to make the audit generous.
Another good analogy is medical marijuana cards in states where marijuana is supposedly only for medical purposes. In theory, doctors are careful gatekeepers. In practice, the doctors doing those certifications have a strong financial incentive to certify as many people as quickly as possible. I've lived in San Francisco, and I've never heard of anybody getting turned down for one of those cards.
[1] e.g.: http://www.economist.com/blogs/schumpeter/2014/03/dewey-lebo... or http://www.economist.com/node/954033
See e.g. https://en.wikipedia.org/wiki/Credit_rating_agencies_and_the...
Legal firms have lawyer-client confidentiality rules, so if they do find anything, with a bit of care you can bury or lie about their findings with impunity.