So, I think is a safety reason. You can get one hell of a shock off these systems. Also, I'm sure the Williams' F1 KERS fire is in the back of many people's minds, even if not directly related.
I'm not sure weight distribution is the real reason since batteries can be shaped and conveniently packaged. They could fairly easily have long thin flat batteries running down the side pods, which could physically be swapped and secured. So, I do think its the disconnect/connect danger.
Swapping cars is clumsy, but I'm sure over time capacity and efficiency will increase leading to no stops for power.
I wonder if they replaced them with fuel cells, would that be an easier on the swap? Could they then just "fuel up" like a petrol-based vehicle?
I'm not sure what can be transferred to regular cars? How often do tires need to be changed? (I guess more often if you have snow and ice some times of year?)
They want to compete with petrol cars not only on the track, but also in the pits.
Le Mans is really just one big automotive experiment, with a lot of the technology trickling down to the rest of us. That's why I love it.
It does not seem like the kind of decision that would catalyze innovation feasible for the consumer market.