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Re:Your First iOS App – 100% Programmatically by Scorponok on Tuesday April 16, 2013 @01:56PM (#5559671)
Our app has ~15 view controllers laid out in a single storyboard, and we haven't had any issues with them. We only have one iOS developer, so I don't know if that makes a difference.

We don't really use segues, though, since they seem to add complexity if you want to pass data around between the view controllers.

Re:Your First iOS App – 100% Programmatically by tvon on Tuesday April 16, 2013 @02:44PM (#5559989)
In case you are not aware, there is UIViewController's `prepareForSegue:sender:` method (http://developer.apple.com/library/ios/#documentation/UIKit/...). In short you figure out which segue was being prepared (segue.identifier) and setup the destination view controller (segue.destinationViewController) as needed.
Re:Your First iOS App – 100% Programmatically by ant512 on Tuesday April 16, 2013 @02:47PM (#5560014)
I've got a production app I switched from nibs to storyboards. It's got a storyboard for the iPhone and a separate storyboard for the iPad. 58 views on each. I'm using segues for pretty much all navigation. It's working amazingly well for me.