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Re:Detecting Tor Communication in Network Traffic by cwu225 on Saturday April 06, 2013 @06:47PM (#5505346)
packet sizes and inter-packet timings. This paper might peak your interests http://cacr.uwaterloo.ca/techreports/2012/cacr2012-08.pdf . It tries to obfuscate the network traffics by morphing them so they statistically look like Skype Traffic.

They even open sourced their code at http://crysp.uwaterloo.ca/software/CodeTalkerTunnel.html

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