I am building a web based service which can also be accessed via an iPhone app. I get paid via micropayments which I aggregate till they reach a certain dollar amount and then process via a payment processor that charges me in single digit percentages. I have the option of using iPhone's own micropayment service but that would hurt me more.
It'd be interesting to see what will result in more profits. My guess would be that the increased sales on the iPhone outweigh the higher profit margin with the alternatives. This depends on your costs too of course (e.g. copyright fees for eBooks)
So for payments received from other sources (non iPhone), you get the full amount, but if you were to make use of the new micropayments in OS 3,0, you'd be down 30%? I can see how that would hurt