To be clear, I am not saying that such a virus will exist eventually. I am just noting that the arguments displayed here are not completely tight, and there are unknown unknowns at play. Some things are unfalsifiable. This is common.
The main point of the article has nothing to do with manufactured technology vs evolved technology. It is fundamentally about the tradeoffs involved in viruses spreading period. I think you either continue to misunderstand the article, or set such an epistemologically high bar for arguments that nothing can ever satisfy you -- which then has nothing whatsoever to do with this specific article.
As for complete satisfaction with arguments, I'll admit you're right. I am often reasonably convinced but I don't know if I would ever give 100% confidence to anything. There can still be loads of zeros or nines after the decimal though. What's concerning here is that the article speaks in absolutes. I'm inclined to thinking in expected values. Even if we believed there were only a 1% chance such a virus could ever be designed by an AI, if the effect were to be a global plague of biblical proportion, we should still take that possibility extremely seriously. There's no humility shown in the writing, and that's the single most problematic part to me.
A major focus of the article is about the fundamental tradeoffs in how viruses operate. Was that not enough for you?