P.S: I am not saying applications will go away but LLM's are clearly massively effective here at the rote parts of it all.
It's hard to keep track of the frontier on bio ML, but it seems that we're going slower than what Demis Hassabis said in 2024 with 5 years to full cell molecular simulation. We still aren't able to reliably model a tiny surface of the cell membrane.
And of course there's Derek Lowe's takes on the drug discovery pipeline waiting for the proof in the pudding.
To me the only reasonable bullish position is that there is a very non-linear AGI threshold for accelerating progress that we haven't hit yet.
For me personally, I'm looking at other more tractable fields as a proxy to measure this kind of progress. The best modest evidence is from the agentic coding area, (modest because these kinds of gains may not translate to bio progress). Other soft-ish fields to like legal/law/tax are also interesting to watch, as a small amount of people are now trusting AI for these areas that were considered totally unusable a year ago. Another proxy is being able to generate generally entertaining media.
Turns out that “give a reasonable probability of being close enough such that you can bootstrap a solution out of experimental data” gives a very high utility and effectively obsoleted several experimental techniques overnight; pretty much “Molecular replacement” is about the only technique for phasing resolution anyone bothers with any more.
But again, “Bio” is an _extremely_ broad term; for every part of the field Alphafold had a big effect on there are a thousand different parts of the field that it did nothing for.
They made huge progress, but I would say that the vast majority of work on this problem was designing the harness for the model. That's a lot of work for each and every domain.
Isn't that so far only static folding?
[0] https://www.science.org/content/blog-post/so-how-ai-drug-dis...
I think typical bubble behavior the leaders have set up the whole promise to fail. Everyone is expecting some faux super intelligence to come and find a cancer solution everyone else missed. However, it is just as likely that vanilla current LLM's will create enough of a productivity boost for back office automations in research heavy hospitals to create the space for regular humans to create these breakthroughs, but LLM's won't be able to claim that for themselves and inevitably “fail”.