In fact, each example group has a grey rectangle in the top-left corner that says "Example" and the distinguishing feature is that it uses a bolder font in a lighter shade of grey. But otherwise a user might think it's also a button. So I guess when you say it's got to be incorporated into a Metro-style design, you just really can't have any other colored rectangles on the page anywhere lest they be confused with input right?
I'm not saying this to be critical of the author. I think he/she did a fantastic job, and the buttons look really well done for Metro style.
"They don't look like buttons" is a complaint about lack of skeumorphism. An extremely common and accepted case, but a case nonetheless.
Metro-like buttons do not look like 'real' buttons and, embedded in non-Metro content, don't look clickable. In a properly designed Metro UI they are unmistakably clickable and work fine in touch devices. Metro is still relatively new and takes some getting used to in the wild. But hey, there was a time when people complained about the lack of underlining in the text of button-looking clickable elements in web pages.
You are right also, in Metro a colored rectangle with a symbol and/or a short word is meant to be clickable. Non-clickable elements should look clearly different in content or in styling. That is fine.
Note: I'm not trying to defend Metro as 'better' or 'worse', only emphasize the fact that it's different.
Metro isn't about skeuomorphic design, you see.