Billing additional hours is a little complicated and varies based on the specific projects and company accounting practices. My current employer pays hour-for-hour for extra time billed, and we record all time worked. My previous employer had a hard cutoff at 40 hours (unless overtime was authorized), with the first 40 billable hours worked being what got recorded. If overtime was authorized for a given contract, one needed to work at least 48 hours per week on it to get paid extra, at which point you got paid hour-for-hour. I don't know why they did this, because the USG's preferred method for recording work hours by salaried employees who are not being paid extra is to record all hours worked but reduce the hourly rate accordingly.
It's a risk of the model. Part of why freelancers cost more per hour.
I would find side projects to work on, a form of '20% time', but I always felt really uncomfortable with the whole situation. Was I expected to forgo pay when there wasn't enough work for me? It was a really weird experience. It wasn't like I was a student working part time, I was living alone in NYC over the summer and had rent and food to pay for.