Depends what you mean by “synced”—do you want your beads state to be coupled with commits (eg: checking out an old commit also shows you the beads state at that snapshot)? Using a separate branch would decouple this. I think the coupling is a nice feature, but it isn’t a feature that other bug trackers have, so using a separate branch would make beads more like other bugtrackers. If you see the coupling as noise, though, then it sounds like that is what you want.