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Re:Ask HN: What Are You Working On? (October 2024) by koeng on Sunday October 27, 2024 @06:41PM (#41966277)
I'm working on synthesizing a genome at home! Here is a video with more details, as well as a picture of my home lab. I've always wanted to build life from scratch, and I finally have a chance to do it.

Video on what I'm doing - https://www.youtube.com/watch?v=CCiuS1oHnKw

Picture of my home lab - https://x.com/koeng101/status/1844150979484319842

I'm trying to build a DNA assembly company right now (been lots of ups and downs lately...), and one thing I need to do is validate the specs of my oligo pool synthesis provider, Agilent, before I release to customers / raise a seed round. So as a stress-test run of my system, I'm synthesizing a genome, and am thinking about trying to livestream it. The unique technology is variety of ways to assemble and validate DNA from oligo pools for a lot cheaper, pretty much enabling a 10x reduction in DNA synthesis cost vs commercial suppliers. I've worked my ass off for nearly 2 years to get to this moment and am so excited!

Re:Ask HN: What Are You Working On? (October 2024) by mindcrime on Sunday October 27, 2024 @09:09PM (#41966975)
> I've always wanted to build life from scratch, and I finally have a chance to do it.

I'm pretty sure I saw this movie... and it didn't end well for existing life on Earth, as I recall. :p

Re:Ask HN: What Are You Working On? (October 2024) by koeng on Monday October 28, 2024 @04:42AM (#41968911)
good thing we live in real life and not a movie
Re:Ask HN: What Are You Working On? (October 2024) by mindcrime on Monday October 28, 2024 @10:48AM (#41971550)
Reality is often stranger than fiction though! :-)
Re:Ask HN: What Are You Working On? (October 2024) by kragen on Monday October 28, 2024 @12:47PM (#41973242)
Less in keeping with the anti-intellectual witch-hunting political agendas of Hollywood, though.
Re:Ask HN: What Are You Working On? (October 2024) by circles_for-day on Monday October 28, 2024 @11:28AM (#41972062)
Don’t worry, synthetic life doesn’t work very well without evolution to tune it into a useful ecological niche. Venter already did something similar.

Tampering with existing viruses and symbionts so they can escape their current minima in the fitness landscape is the more dangerous thing.

Re:Ask HN: What Are You Working On? (October 2024) by koeng on Tuesday October 29, 2024 @09:22AM (#41983599)
In this case, it is literally the Venter genome, just with removed tRNAs / codon sets. I'm collaborating with them on it (they're just doing the final transformation).
Re:Ask HN: What Are You Working On? (October 2024) by cgreerrun on Sunday October 27, 2024 @11:08PM (#41967486)
This is incredible. I have a biochemistry and bioinformatics background, and I've always been curious about how easy and cheap it could be to do various experiments at home. Godspeed!
Re:Ask HN: What Are You Working On? (October 2024) by 0xCMP on Sunday October 27, 2024 @11:17PM (#41967555)
a literal home lab!
Re:Ask HN: What Are You Working On? (October 2024) by 0xEF on Monday October 28, 2024 @04:42AM (#41968908)
My favorite piece of lab equipment is the bed.
Re:Ask HN: What Are You Working On? (October 2024) by owenpalmer on Monday October 28, 2024 @12:22AM (#41967864)
Wow this is very exciting! Always makes me happy when I see your comments on HN, you're always up to something interesting! Are you hiring developers or aspiring bioengineers? (I'm a developer and an aspiring bioengineer)
Re:Ask HN: What Are You Working On? (October 2024) by koeng on Monday October 28, 2024 @04:41AM (#41968901)
Someday hopefully soon when I raise a seed :)

I think if you have the right structure, it is easier to train developers to be bioengineers than bioengineers to be developers! Bioengineering tends to be a more wicked discipline, which seriously affects how one writes their code. Makes it kinda crap. Software devs on the other hand typically aren't as experienced in the other field, and so are coming in blind.

Re:Ask HN: What Are You Working On? (October 2024) by Dig1t on Monday October 28, 2024 @12:23PM (#41972914)
How about free labor? Are you interested in people who want to work for free?
Re:Ask HN: What Are You Working On? (October 2024) by koeng on Tuesday October 29, 2024 @09:31AM (#41983672)
Definitely, producing open source works that would help me! Feel free to send me an email and we can talk about what makes sense to you. Also put some more above.
Re:Ask HN: What Are You Working On? (October 2024) by owenpalmer on Tuesday October 29, 2024 @02:01AM (#41979869)
That's encouraging! The barrier of entry for BioE feels very high compared to software. What do you think is a good way to make a transition between them?

Also, I second what Dig1t said. I would gladly get involved and volunteer my time and skills, just to get my foot in the door. Would contributing to dnadesign be a good place to start?

Re:Ask HN: What Are You Working On? (October 2024) by koeng on Tuesday October 29, 2024 @09:30AM (#41983667)
Definitely! If you're willing to help, throw me an email so we can talk where it would best fit for you :)

some sets of problems I have right now (on the hardware / software side):

Hardware: It'd be great to have an open source plate gripper. I wrote a little bit about the general problem of transferring here - https://keonigandall.com/posts/transfer_problem.html . I have a uarm lite6, but wanted to investigate building an arctos robotic arm to move plates between machines. Just need the gripper! This is something I cannot do myself - I have software skills, and can build things with my hands, but have zero skills on designing new hardware.

Software: A lot more here, but depends on interests. I have some general life-improvements I'm looking at doing, but also some wild ideas that need prototyping

Re:Ask HN: What Are You Working On? (October 2024) by paulmilligrams on Monday October 28, 2024 @01:14AM (#41968034)
Very impressive work. Are you still able to proceed with operating your lab despite the injunction passed against you for theft of trade secrets? [1]

[1] https://www.sideman.com/ronald-fisher-and-ellen-leonida-achi...

Re:Ask HN: What Are You Working On? (October 2024) by koeng on Monday October 28, 2024 @04:35AM (#41968861)
yep, nothing in there prevents me from doing work. That article is mainly their legal team fluffing their own feathers for their clients, which I'd hope that one would be able to read between the lines for, considering it was published by the lawyers themselves. The lawsuit itself is quite frivolous and accusing me of stealing and using source code I didn't steal/use, so just have to go through the legal motions to prove that. The more details you know about the case the more absurd it becomes
Re:Ask HN: What Are You Working On? (October 2024) by worthless-trash on Monday October 28, 2024 @06:34AM (#41969652)
I hope you win and get some big cash rewards for these kinds of accusations.
Re:Ask HN: What Are You Working On? (October 2024) by TechDebtDevin on Monday October 28, 2024 @03:23PM (#41975036)
Very cool, I wish you the best of luck. Fuck Trilobio