To me, the biggest indicator that all the links being posted here about Git submodule systems come from people who don't know what they're doing is the fact that all of them (vdm, pasta, peru, git-aggregator, etc.) are using YAML as a config. Anyone who has worked at least a few years with Git and YAML knows that this type of file is not Git/diff friendly. I've seen too many disastrous merges, and the developers in the company have to keep using unityyamlmerge to resolve a foolish decision by Unity. Moreover, if anyone here has tried to parse YAML, they understand how unnecessary it is to use this format 99% of the time. In your case, the only advice I can give is to use a complete repo config per line, so it doesn't spread across different lines. This ensures the atomicity and integrity of your information.