GeneGPT, a tool-augmented LLM for bioinformatics

Re:GeneGPT, a tool-augmented LLM for bioinformatics by dmezzetti on Monday February 12, 2024 @04:34PM (#39350835)

Initially looking at the title, it seemed like this was a biomed LLM which would be really exciting. But after looking at the project, it's a prompt and an OpenAI API call.

Not saying that it's not useful, just not as exciting.

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Re:GeneGPT, a tool-augmented LLM for bioinformatics by woke_neolib on Monday February 12, 2024 @04:53PM (#39351056)

The repo more or less just constructing a prompt to explain the APIs available and how to use them, wrapped up in CLIs. They include some evaluation tasks, which I guess they wanted to be repeatable, but not sure this warrants a paper -- this should be a GPT in the OpenAI marketplace.

edit: it is! https://chat.openai.com/g/g-HvvFt9ohw-genegpt

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Re:GeneGPT, a tool-augmented LLM for bioinformatics by enjaydee on Monday February 12, 2024 @06:36PM (#39352134)

meditron is the closest I've found

There's also LLaVA-Med for vision

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Re:GeneGPT, a tool-augmented LLM for bioinformatics by sjwhevvvvvsj on Monday February 12, 2024 @08:44PM (#39353289)

I was hoping for a Mistral fine tune at the least.

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Re:GeneGPT, a tool-augmented LLM for bioinformatics by jadynqa on Monday February 12, 2024 @10:42PM (#39354070)

The project was posted on arXiv last April. Back then not a lot of people were doing tool augmentation, let alone domain-specific tools. I guess the whole idea was to prove that LLMs can be augmented by domain tools to do useful staff, which now seems obvious...

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Re:GeneGPT, a tool-augmented LLM for bioinformatics by itchy_spider44 on Monday February 12, 2024 @11:20PM (#39354354)

I just need someone to make a GPT that will process my raw 23AndMe DNA data and confirm that I'm special

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