I think if most people knew the real way most modern music is produced and mastered now (on laptops), and how a lot of masters and music catalogues behind the scenes are literally re-encoded from mp3 backups, they'd see that lossless music is not an exact science.
Flac is also not universally supported by playback devices, and can become unsupported at any time faster than Mp3, so using more universal formats is not necessarily a bad thing.
That being said, I use HD lossless WAV copies for all of our own masters.
That's why I go with lossless encodings. They aren't a guarantee of good sound quality, but the odds of them being so are much, much higher.
Personally, I don't actually care about whether or not FLAC is widely supported across devices. My media center will do on-the-fly conversions and lets me stream to anything, and if I need a different format for some reason, I can just convert from the FLAC to whatever I need.
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