I think these machines are a waste of money and the threat of terrorism vastly overblown in general, but if you make the assumption that the machines are desirable and useful, you can't make an exception for small airports.
However, I would like to post an excerpt from the last link that I shared.
"TSA acknowledges that it takes 10-12 seconds per passenger to go through the scanner while only 2 seconds is needed for the metal detector. Since the scanners have a 54% false positive rate, approximately half of those using the scanners receive some form of pat-down, further slowing the process. When hundreds of people are in line, that additional 8 to 30 seconds each adds up, resulting in substantial delays.
So while TSA claims that the scanners speed up the screening process, the opposite, in fact, is true."
For any other product on the market, a failure rate of 54% would be cause for a complete recall if not a wholesale scrapping of the product but apparently does not apply in this case.
Of course, a machine with ~50% false positive and negative rates is indistinguishable from flipping a coin.
Body scanner proven ineffective video http://www.youtube.com/watch?v=idICUSiGcqo
Body scanner has 54% false positive rate https://www.propublica.org/article/sweating-bullets-body-sca...
Cost of the body scanners http://www.advicegoddess.com/archives/2012/03/07/what_tsa_se...
Some pretty interesting numbers here:
"Of these, 18 airports handle fewer than 1,000 passengers daily but were equipped with 21 scanners at an estimated installed cost of $7.3 million to screen 9,538 passengers per day."