Why they would agree to it - if convicted they lose that money anyway, if found not guilty, by paying for the servers now they will still have all their data if they decide to get the site back online and resume business as normal.
You need to think about the cost to the hosting company. I assume they are holding a lot of data and a large number of servers are tied up doing nothing without payment. They have every right to clean the server and allocate it elsewhere.
If anyone should be footing the bill it should be the prosecutors themselves. They can't take it from MegaUpload. The defense shouldn't pay for it as the data may actually damage their case. You would expect them to be in a stronger position with the proof gone.
You also need to think about the damage to the company. I am sure the prosecutors think they have a slam-dunk but what if they loose? They would have effectively destroyed a multi-million dollar company as a result of a failed prosecution. You could expect a fairly large compensation package in this scenario.
One reason this may be patently false is that I'm sure Hollywood would love to see people put in jail for copyright infringement.
Maybe the most logical, but certainly also the most immoral and illegal. That's basically stealing money - why should Megaupload pay for data hosting if it can't use? As long as it's not ruled illegal by the court, it still has the right to use its money just the way it wants.