The point you were getting at simply doesn't exist. Ask those ethnic Russians if that's an Estonian or Russian name, they will tell you it's a Russian name.
Writing Russian names in Estonian script does not make them Estonian names.
Writing Russian names in Estonian script does not make them Estonian names.
And, to your point about them being called Russian in Estonia, I've heard them called "Russian speaking" more than Russian. Then, again, the Estonians I know take a pro-integration position on the matter, so it could be a difference.