Database of 200k cell images yields new mathematical framework

Re:Database of 200k cell images yields new mathematical fram... by version_five on Thursday January 05, 2023 @04:37PM (#34267048)

This is the kind of dataset it would be super cool to train a generative AI model on. I can picture (naively) being able to generate cells with specific conditions that are rarely or never seen, and being able to dial up and down different features to look at how they affect diagnostics or whatever else you might do with these images. I hope that's on their radar

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Re:Database of 200k cell images yields new mathematical fram... by hyperific on Thursday January 05, 2023 @05:54PM (#34268136)

I was at the CytoData conference at the Allen Institute a few months ago and there were several talks specifically about this.

https://youtu.be/kF9cd7iw1YI

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Re:Database of 200k cell images yields new mathematical fram... by version_five on Thursday January 05, 2023 @06:57PM (#34268834)

Thank you that looks very interesting

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Re:Database of 200k cell images yields new mathematical fram... by ddri on Thursday January 05, 2023 @08:56PM (#34269965)

Thank you, this looks fascinating. Sounds like a great conference too.

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Re:Database of 200k cell images yields new mathematical fram... by primitivesuave on Thursday January 05, 2023 @08:17PM (#34269655)

You actually do have access to the dataset here with some links to Quilt: https://www.allencell.org/genomics.html

I am sure you could get the raw data for peer review purposes, by emailing the contact on that page. Your idea sounds really interesting!

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Re:Database of 200k cell images yields new mathematical fram... by version_five on Thursday January 05, 2023 @10:01PM (#34270419)

Can you help me understand where the image dataset is? I'm not familiar with the terminology here and when I look I see what I think is gene sequence data

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Re:Database of 200k cell images yields new mathematical fram... by sooheon on Thursday January 05, 2023 @10:41PM (#34270683)

Probably a mislink. See here: https://www.allencell.org/data-downloading.html#sectionVaria...

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Re:Database of 200k cell images yields new mathematical fram... by version_five on Friday January 06, 2023 @08:30PM (#34284021)

Yes that makes more sense, thanks!

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