It only seems like academic research has diverged because the benefits of current research haven’t materialized as real, usable features in programming languages that people use to get work done. But if you look at features that we use in day-to-day programming right now, you can trace the heritage of these features back to research programming languages (like Self or Haskell) and then farther back to more abstract research into esoteric subjects like category theory and substructural logic.
The esoteric parsers that people invented in the past were, in a sense, necessary because people were ignorant of how to design languages in such a way that they could support a rich syntax without using a complicated parser. It took a lot of academic research for us to figure out that, say, you could probably use an LALR parser for lots of existing languages, and you could stick to LL(1) for new designs.
But I think during the recent decades, there has been a consensus that perverse incentives in academia are degrading research quality and preventing papers from becoming actually usable in real-life applications (mainly with the focus of paper metrics and the constant need to apply for grants). So although I think academia is still important long-term, I understand why some people would think it's becoming less useful.
Actually that's probably under-selling the problem. It's not just that Jon doesn't value the opinions of academics, he doesn't really value the opinions of anyone except Jonathan Blow.
Which is probably a healthy way to attack your first video game project, it's not as though Braid would be more likely to be a success if Blow stopped believing in it himself. But I would be surprised if that's true of a programming language.
> most academic CS works haven't really helped developers in building better programs and tools
It's doubtless possible to measure "most works" and "really helped" in ways which allow you to either draw this conclusion, or not, as you prefer but I don't think that's a useful way to think about it at all.