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Re:Neutrino experiment affirms faster-than-light claim by copper on Friday November 18, 2011 @03:01AM (#3251022)
Roughly, they used gps signals to synchronize two accurate clocks, one each at the source and the destination.

For what it's worth, this part of the first paper is pretty accessible - at least, as to how they did it - it's more difficult to poke holes in how accurate it was :)

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