But for Kubernetes manifests specifically, the right tool for the job is Kustomize[1] (which in that case does what Helm does for you, keeping dynamic variables separate). It ships with kubectl and I'm a big believer in using default tools when possible.
> Like you're installing new version, do you go over manifests and edit those by hand over and over every update?
I check the patch notes, diff the configuration files to see if anything new popped up, do the required changes if necessary, jump the version number and deploy.
It sounds laborious but it's really not that much work most of the time, and more importantly it forces you to have a good sense for what and how everything works. Plus it allows you to have a completely transparent, readable environment. Both are important for keeping things running in a production environment. Otherwise you might find yourself debugging incomprehensible systems you've never paid attention to in the middle of the night with 2 hours left before traffic starts coming in.
[0]: https://github.com/mikefarah/yq
[1]: https://kustomize.io
Something simple like GitLab probably would be impossible to understand for a simple person.
How do you configure it? Like you're installing new version, do you go over manifests and edit those by hand over and over every update? Do you maintain some sed scripts?
helm is awesome because it separates configuration.