The issue is not so much that an employee has questionable opinions, but rather that his company endorses his blog containing those opinions with a direct link:

"Rather than talk about what he does, check out his website."

While I'm sure that post was not on his site at the time the company decided to link to it, they are still currently in the awkward position of endorsing it. I find it ironic that in support of his anti-intellectualism Andrey references an essay by Paul Graham discussing the differences between engineering and science. This essay does not support his point unless you only bother with the most cursory of glances at it.