Re:Catwalk: Identifying closely related sequences n lrg micr...
by nimfan on Saturday July 09, 2022 @11:16AM
(#32035816)
"compiled solution, coded in Nim to increase performance" ...
"Catwalk operates about 1700 times faster than, and uses about 8 % of the RAM of, a Python reference-based compression and comparison tool in current use for outbreak detection."
Re:Catwalk: Identifying closely related sequences n lrg micr...
by cb321 on Saturday July 09, 2022 @01:27PM
(#32037332)
You/the abstract round down - deeper table in the paper says 1750X faster. :-) But really it's a big 1650X..2020X range for the 25th to 75th percentiles.
"Catwalk operates about 1700 times faster than, and uses about 8 % of the RAM of, a Python reference-based compression and comparison tool in current use for outbreak detection."