There was a near miss of heat tile damage from a foam strike very early in the STS program - STS-27 but it was on a classified military payload flight and the whole thing was ignored.
I wouldn't quite say "covered up" but the damage would have been a lot harder to hand-wave away if this had been a normal mission with all the media coverage those got.
Today we've seen incredible advances in booster recovery and reuse in part spurred by learnings from shuttle reuse including the learning about how expensive heat shield maintenance/refitting turned out to be on the shuttle.
(A bit of an aside, but ironically and sadly the Challenger disaster didn't "fail hard enough" to drive costs down or do much to reimagine the shuttle program: that problem was a dumb booster problem that had nothing to do with the shuttle directly and could have happened to any payload. (It was still terrible that it happened to that shuttle and its crew, specifically, of course.) It's curious to wonder if something more like the Columbia disaster, which did more reflect shuttle maintenance issues, may have had an interesting scientific impact if it had "switched places" in a different timeline.)