At risk of being excessively pedantic, there's generally the motion, the response, and then movants' reply, and then the judge's order. Sometimes the brief and the motion are separate documents (particularly when you're moving for a temporary restraining order or the like). So that's generally 4, not 3, documents that you'd expect to see.
Also, different courts have different rules on what the appropriate font is. There are some jurisdictions that explicitly prescribe a list of acceptable fonts (e.g., apparently Connecticut gives you a choice between Arial and Univers), and Times New Roman isn't necessarily on that list.
Re the number, that's why I said "at least three". The point I'm making is that it is practically never 2, so one should not conclude that the SEC lost simply because another story appeared that seemed to contradict its view. You have to wait for the one that actually says it's a judge's orders, counting is not my proposed method.
As for the font, sure. It was just another way of saying "official-seeming", I'm trying to encourage people to look past the official-ness because all the filings look pretty similar and you do have to read the title. Nevertheless in the federal courts (except SCOTUS) and in California, which are the cases you see most often on HN, it seems to be Times New Roman everywhere.
In summary: the judge agreed with the SEC. The subpoena is being enforced.