It is too bad they didn't bond the two ethernet links. Reading through I didn't see a mention of what the other ethernet link was used for. That should have given them a jump in speed.
We're considering building one of these but I used to work for a clustered storage vendor. The import thing to notice here is this is single client performance - aggregate performance is often considerably better. ie, you might be able to push 1GB/s with 10 clients, but only 100MB/s with one...
Oh my. These guys' expectations were very, very wrong. Many single-drive configurations can sustain 120MB/s+ at the beginning of the platter. A single drive! It should be no surprise that a 45-drive beast can saturate a GbE link!