"(2) Retention bonus to compensate Sue for lost opportunities during the transition period: $165,000."
This seems to undermine Mitchell Baker's reasons for her salary increase, doesn't it?
Wikipedia also gets a slightly higher score from CharityNavigator than Mozilla, edging them out on more efficient earnings, lower admin overhead, but far ahead on "growth of expenses": https://www.charitynavigator.org/ein/200049703 vs https://www.charitynavigator.org/ein/200097189
[1] https://en.wikipedia.org/wiki/Wikipedia:Fundraising_statisti...
[2] https://wikimediafoundation.org/about/financial-reports/#sec...
[3] https://meta.wikimedia.org/wiki/Wikimedia_Foundation_salarie...
[4] https://lists.wikimedia.org/hyperkitty/list/wikimedia-l@list...
They're not really comparable organizations. The corporate comparisons you started with were closer comparison, though Mozilla has some unique circumstances.
Using the same timescale as the Wikipedia article, 2008 to 2018, Mozilla's revenue had risen from $78.6 million to $436 million. A more than 400% increase. Does that justify her salary?