Trees grown among other trees have to grow up to reach sunlight. The innermost part of the lower trunk might have knots from branches when the tree was young, but once they reach harvestable size, there's a fair amount of clear lumber down low.
Trees grown in the open don't have the pressure to grow upwards, and end up with branches down low throughout their lives (from the center all the way through to the bark). As a result, there's very little clear lumber in them.
Disclaimer, I'm a furnituremaker, not a forester. The above is somewhat better than pure speculation, but likely misses some important bits.
For hardwoods, it's typically the heartwood that's more desirable. Walnut and cherry both have pretty strongly contrasting sapwood that does not match the customer's expectation for the color of those woods, for instance.
^ this is pure speculation