The underlying report is from 2020 [1] and seems to include data up to 2018.

I've been searching for Sweden in it. There are references to CO2/diesel tax reductions for mining, maritime and rail sectors. Glancing at Figure 2-9, it looks like "infrastructure" and "production" are the two blocks, so I think that confirms it.

I think the net number in OPs article is based on Figure 2-9 and 2-13, but that's just a guess.

[1] https://op.europa.eu/en/publication-detail/-/publication/92a...

A lot of the accounting in these things saying fossil fuels are subsidised in countries where they are not are pretty sketchy. It tends to be either that there is say a large tax on oil company profits but they can offset their costs in calculating profits and that gets called a subsidy. Or they figure the pollution costs are more than the tax levied and call that a subsidy. Straight subsidies of the government handing you money to burn stuff are pretty rare.