I suspect it will create confusion to use the same word for a multi-dimensional meaning, especially when there is preexisting literature about the "autism spectrum" that used the single-dimensional meaning. I think it would be ideal to use another term.
It seems that the thing we're talking about is "a cluster of imperfectly correlated traits". Googling a bit, I see "syndrome" as one possibility (although it may carry the connotation of a disease, although that may be inevitable with autism). "Trait cluster"?
(If one wants to dig into the light metaphor: The thing you're looking at is a beam of light. You use a prism, and that splits the beam into its constituent frequencies. When you shine the light through a prism onto paper, the resulting image is a spectrum. But the original light beam itself is not a spectrum. Thus, the most appropriate way to use "spectrum" in connection with autism would be for someone to take a test that measures several different traits, and then the test results are the "spectrum". I'm not going to try to fight for that definition, though.)
The Autism Phenome Project is predicated on the idea that there may be some underlying homogeneity so that we might identify clinically meaningful subgroups within the autism "spectrum"/"diversity", which may help us develop better targeted interventions, support services, etc.
Great question.