You do an accounting of the nearby massive objects and their distances from each other, pairs of objects within certain bounds of mass and distance can be treated like there are only those two objects in the universe with the understanding that there will be a small error because of outside influences. It’s an approximation, but in the right circumstances a very good one.

Each planet and the sun can be done like this, ignoring all of the other planets. Each moon and its planet can be considered a two body system ignoring the rest of the moons.

If you just randomly generated a bunch of massive bodies and pressed play, you would have few 2 body systems and a lot of chaos, but that’s a problem that solves itself as the chaos results in either collisions or ejections.