If you'd prefer working with the data we have presented, take a look at https://ucr.fbi.gov/hate-crime/2019/tables/table-1.xls . Other than racially motivated hate crimes which comprise most FBI recognized hate crimes, the next most is religious hate crime, below which is sexual orientation motivated hate crimes. And sexual orientation motivated hate crimes rank very similarly to religiously motivated hate crimes. In other words, sexual orientation oriented hate crimes are the 3rd most frequent, and very close in # to religiously motivated hate crimes, the 2nd most frequent hate crime.

Specifically with anti-gender-identity based hate crime, we can see that anti-transgender hate crime has one of the highest incident numbers for any individual cohort, despite knowing that only 0.6% of the population identifies as trans according to data presented earlier in this thread.