In Haskell, using typeclasses like Typeable, you get the power of keeping types in runtime, but the types are actually erased.
You are quite correct, almost all strongly typed languages perform some type erasure for efficiency purposes. The problem, as I see it with Scala, is rooted in defect in the JVM; the system looses type information and cannot verify at compile-time that all your types will be correct.
Please correct me if I'm wrong or have misunderstood you.
When Haskell targets x86, the x86 opcodes surely don't help Haskell verify that [[Int]] really has [Int]s in there, but it's not necessary because it is proven at compile-time. So I am a bit confused why Scala needs the JVM's help.
Now, consider the difficulty of Scala wherein it's possible to represent a compound type. Erasure ensures that only the first parameter in the chain is generated in the type-erasure step, destroying the meaning of the union. There are kludgy ways around this--wrapping, bundling up manifests--but in the end the JVM does not allow the transmission of necessary information efficiently. Manifests serve the purpose of maintaining parameter information at runtime, but do so at the expense of code cache space and stress system resources. PermGem exceptions are much more common, in my experience, when doing Scala work as compared to Java.
The shorter answer to your question is the JIT nature of Java combined with a byte-code designed not to maintain the information needed to generate all possibilities of machine code on demand. LLVM IR maintains such information for Haskell--when targeting machine code directly I believe this is achieved by static polymorphic compilation, but I could be wrong; Stack Overflow time?--and the CLR does the same for C# and friends. It's a JVM problem entirely. The JVM promises to perform any and all compilation but is unable to accept all the information needed to do so effectively.
The assessment that Scala is a pretty structure built of weak wood is not too far off, at this point. Compared to other strongly functional languages--Haskell and ML, say--the type system is shoddy and limited. In part this is a frustration of maintaining objects on Java's terms, but also defects in the JVM: type erasure is a hair-shirt that neither of languages I mentioned previously have to wear. You can somewhat avoid the loss of types with manifest hacks, but it's shoddy business. Often you can't; note that Akka has a distinctly dynamic feel, being that certain messaging functions--!! and !!!--must return an Option[Any] even when the original message is well-typed. The system loses the type information at runtime!
Compilation speed is also an agrivation. It's a slower process than Haskell--not zippy to begin with--and comes with less result, to boot. All that said, I tentatively like Scala, especially if a project is required to run on the JVM. I find it to be an especially pragmatic language, if unbeautiful and not something I intend to use for long-term, exploration coding. A fine choice for a language to be used in anger, let's say, if the memory usage of the JVM is of no concern.