Amiga disks can't be read by PC floppy controllers whether they're USB or not (barring the 2 drive hack seen here before) because they write a whole track at once and pc floppy controllers can't be programmed to understand their sector headers.
If you want to read/write Amiga disks with a PC you need a greaseweasel or a Kryoflux
If I use a real floppy disk controller + Linux can write to those disks in the correct format. It works. I am not an expert in how any of this works though. What I have at the moment is sufficient.
I am sure people have had luck with USB drives. I have not.