[1] Information, physics, quantum: The search for links, John Wheeler 1990
[[2] The Simon's institute has formally funded such a program, though the movement within physics is much larger https://www.simonsfoundation.org/mathematics-physical-scienc...
Edit: fixed citation 1. And removed reference to infinities, as indicated below.
I think it's a quite interesting crossroad.
Either reals don't exist, and everything is at most turing complete, in which case the universe is detemernistic and predictable, yet there are very hard boundaries to what can be known and proven.
Or reals DO exist in which case the church turing thesis is false, as the universe (with it's operations on reals) is a reified example of a super turing system, in which case we can know a lot more things than in the discrete case, but some of that knowledge can only be grasped intuitively, because the moment you try to articulate it into formulas, it's discretized and thus limited to your sub-universe/brain powerfull turing machine.
So any part of reality that you can reduce to an efficient computation on a quantum computer, admits a description using the rationals only. But I might be out of my depth here.
Non-computable reals are also perfectly capable of modeling "analog reality" (because for all intents and purposes, reality could be discrete and finitely describable very small scales).
Quantization would like a word with you.
It's more accurate to say that only integers appear to be relevant in describing the nature of the nuclear forces and electromagnetism/electroweak force.
And it seems that, at least for the moment, we're headed in a direction of quantization of gravity and a Planck unit of time as well.
In some sense (because of the wavefunction) quantum mechanics is less discrete than classical mechanics, a qubit system which would be classicaly described by a single bit is described by a state that sits on a continuous manifold (the Bloch sphere).
However, across quantum mechanics, there is at least unity on the 'quantum' part. And that's really the point of contention here in terms of integer values, right?
I don't know what this means, but there is this idea that quantum mechanics leads to integer valued stuff because the first models studied were things like the hydrogen atom and the simple harmonic oscillator which both have a natural integer valued observable (the energy). This is not generally the case, however and in quantum mechanics there are many observables which are not integer valued, for example the kinetic energy of a free particle can be any non-negative real.
It turns out that a lot of interesting physics these operators have physically interesting discrete spectrum.