[1] https://unix.stackexchange.com/questions/396809/zsh-share-hi...
It makes sense. It's preferring to add to history immediately so that it's available to other shells without having to wait for the command to finish.
From the manpage:
> INC_APPEND_HISTORY_TIME This option is a variant of INC_APPEND_HISTORY in which, where possible, the history entry is written out to the file after the command is finished, so that the time taken by the command is recorded correctly in the history file in EXTENDED_HISTORY for‐ mat. This means that the history entry will not be available immediately from other instances of the shell that are using the same history file. This option is only useful if INC_APPEND_HISTORY and SHARE_HISTORY are turned off. The three options should be considered mutually exclusive.
It looks like either share_history or inc_append_history break recording duration in a fundamental way. The TL;DR is that the history line is written out before the command in question completes. I guess the thinking is that inc/shared history with some very long running command is not as useful if you wait until it ends and you have elapsed time data to append that line. I feel like that might be a personal issue - like if you almost only ever run commands 1-90 seconds then you are fine with the delay.
Anyway, this also explains why it is available from the `history -fD` command but not in the file.
From the Zsh man page:
EXTENDED_HISTORY <C> Save each command's beginning timestamp (in seconds since the epoch) and the duration (in seconds) to the history file. The format of this prefixed data is: `: <beginning time>:<elapsed seconds>;<command>'.
(EDIT: My best guess explanation is some competing/conflicting setopt, but the Zsh mailing list could almost surely help you. Also, `history -fD` may show the correct answer even if the saved file has all 0s.)