If Facebook had a continuous, long term, PR campaign, where they reasonably established themselves as helping small businesses, and then they did this. I would get it.
But like this? In isolation, it feels more like a knee jerk reaction and not a thought out messaging campaign.
My guess is that the root cause is one of internal perception vs external perception. They see the threat and honestly believe they're in the right. That's how they rationalize it, but the rest of the world assumes more nefarious intent (which is also exaggerated, the truth is likely somewhere in the middle).
And I'm not sure what unfair 'nefarious intent' people are assigning - FB have made it clear that one of their goals is reducing Apple's control over their own platform.
It is to show a credible commitment to Apple's other adversaries, in an attempt to rally enough power to take them down a peg and (more importantly) win some control over the Iphone platform.