This is true, but almost no content would fall under your definition of "deliberate misinformation designed to harm people". That phrasing might be said to be the standard, but it wouldn't be applied that way.
Also, the quote from the YouTube spokesperson pretty explicitly says that if something is wrong with the vaccine YouTube will not allow you to say that. That would be something specific, rather than broad. I doubt that they would actually silence someone that points a specific flaw in the vaccine, but that's what their spokesperson said (read: their words are unreliable).
This is how it works with modern information spread. Of course you can have concerns and you should be able to state them openly. Any doctor that wouldn't have concerns without a long term clinical study does lie.
None of this finicky language is ever going to amount to anything, frankly. The powers that be ultimately control what is broadcast to the masses, even if those powers change their minds.
There's a mile-wide chasm between posting an opinion that differs from the official government line and posting something that's deliberate misinformation designed to harm people. YouTube are only removing the latter. The article actually quotes a YouTube spokesman saying as much "A YouTube spokesman told Reuters that general discussions in videos about “broad concerns” over the vaccine would remain on the platform."